Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
TGCT rs10519497 chr5:116553829 C/G 1.9E-13 131 46.3 28.8 17.1 KM Plot
TGCT rs10544049 chr19:38000517 AAAT/A 1.39E-13 134 46.3 35.37 17.1 KM Plot
TGCT rs10590409 chr17:32814920 AGCT/A 0.000126 129 24.27 60.73 37.5 KM Plot
TGCT rs10626710 chr12:107089023 C/CAG 0.000103 134 42.27 45.47 28.8 KM Plot
TGCT rs1073261 chr12:107135942 A/G 0.000113 133 42.27 45.1 28.8 KM Plot
TGCT rs10746063 chr12:107086240 G/T 5.07E-5 134 46.77 45.1 28.67 KM Plot
TGCT rs10746064 chr12:107086245 G/T 5.07E-5 134 46.77 45.1 28.67 KM Plot
TGCT rs10746067 chr12:107180069 A/G 0.000113 133 46.77 45.1 28.8 KM Plot
TGCT rs1075601 chr5:167811556 A/T 6.08E-5 134 42.1 37.95 53.1 KM Plot
TGCT rs10760515 chr9:130690412 G/C 2.03E-5 131 118.52 46.77 41.27 KM Plot
TGCT rs10773578 chr12:129290026 G/C 1.39E-5 134 41.33 44.28 29.53 KM Plot
TGCT rs10773762 chr12:130765366 C/T 0.000116 134 46.77 33.53 35.67 KM Plot
TGCT rs10775302 chr16:67792439 C/T 0 133 46.07 24.1 0.57 KM Plot
TGCT rs10778497 chr12:107027908 C/G 3.36E-8 134 27.93 37.75 50.97 KM Plot
TGCT rs10778498 chr12:107063340 C/A 0.000103 134 48.87 38.2 28.8 KM Plot